SLURM Script Generator

Available Queues

Queue Name	CPUs	Memory	Nodes	GPUs
normal	128	2000	7
gpu	28	250	1	4
classroom	72	120	5

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 normal

 gpu

 classroom

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Memory (GB)

 

Nodes

 

GPUs

 

Modules/Commands

Modules to load

3d-dna/20190801-IGB-gcc-8.2.0-Python-3.7.2 454/2.8 ABySS/2.0.2-IGB-gcc-4.9.4 ADOL-C/2.6.3-IGB-gcc-4.9.4 AGAT/0.5.1-IGB-gcc-8.2.0-Perl-5.28.1 AGEnt/0.2.1-IGB-gcc-4.9.4 AMOS/3.1.0-IGB-gcc-4.9.4 AMPHORA2/20190104-IGB-gcc-4.9.4 ANGSD/0.933-IGB-gcc-4.9.4 ANGSD/0.941-IGB-gcc-8.2.0 ANIcalculator/1.0 ANNOVAR/2019Oct24-IGB-gcc-8.2.0-Perl-5.28.1 ARB/6.0.6 ARCS/1.0.0-IGB-gcc-4.9.4-Perl-5.24.1 ARCS/1.2.1-IGB-gcc-8.2.0-Perl-5.28.1 ASEr/0.2-IGB-gcc-8.2.0-Python-3.7.2 AUGUSTUS/3.3-IGB-gcc-4.9.4 Abseil/20230125.2-IGB-gcc-8.2.0 Abseil/20230125.3-IGB-gcc-8.2.0 AdapterRemoval/2.1.7-IGB-gcc-4.9.4 AdmixTools/1.0.1-IGB-gcc-4.9.4 AlignGraph/20180222-IGB-gcc-4.9.4 Anacapa/20200814-IGB-gcc-4.9.4-Python-2.7.13 Anaconda2/4.3.1 Anaconda3/2019.10 Anaconda3/2022.05 Anaconda3/2023.09 Anaconda3/2024.02-1 Anaconda3/2024.06-1 Anaconda3/5.0.1 Anaconda3/5.1.0 ArcadeLearningEnvironment/0.5.1-IGB-gcc-4.9.4-Python-2.7.13 Arlequin/3.5 Assemblytics/3f570cd-IGB-gcc-4.9.4 Assemblytics/df5361f-IGB-gcc-4.9.4 BBMap/38.36-Java-1.8.0_152 BBMap/38.94-Java-1.8.0_201 BCFtools/1.12-IGB-gcc-8.2.0 BCFtools/1.17-IGB-gcc-8.2.0 BCFtools/1.4-IGB-gcc-4.9.4 BCFtools/1.5-IGB-gcc-4.9.4 BCFtools/1.7-IGB-gcc-4.9.4 BCFtools/1.9-IGB-gcc-4.9.4 BEAST2/2.7.5-IGB-gcc-8.2.0-CUDA BEAST2/2.7.5-IGB-gcc-8.2.0-SSE BEDTools/2.21.0-IGB-gcc-4.9.4 BEDTools/2.26.0-IGB-gcc-4.9.4 BEDTools/2.28.0-IGB-gcc-8.2.0 BLASR/4.0.0-IGB-gcc-4.9.4 BLAST+/2.10.1-IGB-gcc-8.2.0 BLAST+/2.13.0-IGB-gcc-8.2.0 BLAST+/2.2.31-IGB-gcc-4.9.4 BLAST+/2.6.0-IGB-gcc-4.9.4 BLAST+/2.7.1-IGB-gcc-4.9.4 BLAST+/2.9.0-IGB-gcc-4.9.4 BLAST/2.2.26-Linux_x86_64 BLAT/3.5-IGB-gcc-4.9.4 BRAKER/2.1.2-IGB-gcc-4.9.4 BRAKER/2.1.5-IGB-gcc-4.9.4 BRAKER/2.1.5-IGB-gcc-8.2.0 BRAKER/2.1.6-IGB-gcc-8.2.0 BRAKER/3.0.3-IGB-gcc-8.2.0 BRIG/0.95-Java-1.8.0_152 BS-Seeker/2.1.2-IGB-gcc-4.9.4-Python-2.7.13 BS-Snper/20170222-IGB-gcc-4.9.4-Perl-5.24.1 BUSCO-db/4 BUSCO/3.0.1-IGB-gcc-4.9.4-Python-2.7.13 BUSCO/4.1.4-IGB-gcc-8.2.0-Python-3.7.2 BUSCO/5.1.2-IGB-gcc-8.2.0-Python-3.7.2 BUSCO/5.3.2-IGB-gcc-8.2.0-Python-3.7.2 BUSCO/5.4.4-IGB-gcc-8.2.0-Python-3.7.2 BUSCO/5.5.0-IGB-gcc-8.2.0-Python-3.7.2 BWA/0.5.9-IGB-gcc-4.9.4 BWA/0.6.2-IGB-gcc-4.9.4 BWA/0.7.15-IGB-gcc-4.9.4 BWA/0.7.17-IGB-gcc-4.9.4 BWA/0.7.17-IGB-gcc-8.2.0 BaMMmotif/2.0 BamM/1.7.3-IGB-gcc-4.9.4-Python-2.7.13 BamTools/2.4.1-IGB-gcc-4.9.4 BamTools/2.5.1-IGB-gcc-4.9.4 BamTools/2.5.1-IGB-gcc-8.2.0 Bandage/0.8.1 BayeScan/2.1 BiG-SCAPE/1.0.1-IGB-gcc-4.9.4-Python-3.6.1 BiG-SCAPE/1.1.5-IGB-gcc-8.2.0-Python-3.7.2 Bifrost/1.0.4-IGB-gcc-8.2.0 BioPerl/1.7.1-IGB-gcc-4.9.4-Perl-5.24.1 BioPerl/1.7.1-IGB-gcc-4.9.4-Perl-5.26.1-unthreaded BioPerl/1.7.2-IGB-gcc-8.2.0-Perl-5.28.1 Biopieces/2.0-IGB-gcc-4.9.4-Perl-5.24.1 Biopython/1.68-IGB-gcc-4.9.4-Python-2.7.13 Biopython/1.68-IGB-gcc-4.9.4-Python-3.6.1 Biopython/1.76-IGB-gcc-4.9.4-Python-3.6.1 Biopython/1.76-IGB-gcc-8.2.0-Python-3.7.2 Biopython/1.79-IGB-gcc-8.2.0-Python-3.7.2 Biopython/1.83-IGB-gcc-8.2.0-Python-3.10.1 Bismark/0.17.0-IGB-gcc-4.9.4-Perl-5.24.1 Bismark/0.18.1-IGB-gcc-4.9.4-Perl-5.24.1 Bismark/0.22.1-IGB-gcc-4.9.4-Perl-5.24.1 Bismark/0.22.3-IGB-gcc-8.2.0-Perl-5.28.1 Bowtie/1.1.2-IGB-gcc-4.9.4 Bowtie/1.2.0-IGB-gcc-4.9.4 Bowtie/1.2.2-IGB-gcc-4.9.4 Bowtie/1.3.0-IGB-gcc-8.2.0 Bowtie2/2.1.0-IGB-gcc-4.9.4 Bowtie2/2.3.1-IGB-gcc-4.9.4 Bowtie2/2.3.2-IGB-gcc-4.9.4 Bowtie2/2.3.5.1-IGB-gcc-4.9.4 Bowtie2/2.4.1-IGB-gcc-8.2.0 Bowtie2/2.4.2-IGB-gcc-8.2.0 Bowtie2/2.4.5-IGB-gcc-8.2.0 Bowtie2/2.5.3-IGB-gcc-8.2.0 Bracken/2.6.2-IGB-gcc-4.9.4 Bracken/2.6.2-IGB-gcc-8.2.0 BreakSeq2/2.2-IGB-gcc-4.9.4-Python-2.7.13 CCMpred/20191102-IGB-gcc-4.9.4 CD-HIT/4.6.6-IGB-gcc-4.9.4 CD-HIT/4.8.1-IGB-gcc-8.2.0 CHEUI/20240719 CLASS2/2.1.7-IGB-gcc-8.2.0 CLUMPP/1.1.2 CNVkit/0.9.10-IGB-gcc-8.2.0-Python-3.10.1 CNVkit/0.9.8-IGB-gcc-8.2.0-Python-3.7.2 CNVnator/0.3.3-IGB-gcc-4.9.4 CNVnator/0.3.3-IGB-gcc-4.9.4-Python-2.7.13 CONCOCT/1.0.0-IGB-gcc-4.9.4-Python-3.6.1 CONCOCT/1.1.0-IGB-gcc-8.2.0-Python-3.7.2 COPIES/0.3-IGB-gcc-8.2.0-Python-3.10.1 CUDA/10.0.130 CUDA/10.1.105 CUDA/11.0.3 CUDA/11.1.0 CUDA/11.2.2 CUDA/11.3.0 CUDA/11.8.0 CUDA/12.5.1 CUDA/8.0.61 CUDA/8.0.61-IGB-gcc-4.9.4 CUDA/9.0.176 CUDA/9.1.85 CUnit/2.1-3-IGB-gcc-4.9.4 Canu/1.4-IGB-gcc-4.9.4-Perl-5.24.1 Canu/1.5-IGB-gcc-4.9.4-Perl-5.24.1 Canu/1.6-IGB-gcc-4.9.4-Perl-5.24.1 Canu/1.7-IGB-gcc-4.9.4-Perl-5.24.1 Canu/1.7.1-IGB-gcc-4.9.4-Perl-5.24.1 Canu/1.8-IGB-gcc-4.9.4-Perl-5.24.1 Canu/1.9-IGB-gcc-8.2.0-Perl-5.28.1 Canu/2.0-IGB-gcc-8.2.0-Perl-5.28.1 Canu/2.1.1-IGB-gcc-8.2.0-Perl-5.28.1 Canu/2.2-IGB-gcc-8.2.0-Perl-5.28.1 CheckM/1.0.7-IGB-gcc-4.9.4-Python-2.7.13 CheckM/1.1.3-IGB-gcc-8.2.0-Python-3.7.2 CheckM/1.1.9-IGB-gcc-8.2.0-Python-3.7.2 CheckM2/1.0.1 Chromonomer/1.13-IGB-gcc-8.2.0 Circlator/1.5.1-IGB-gcc-4.9.4-Python-3.6.1 Circlator/1.5.5-IGB-gcc-8.2.0-Python-3.7.2 Circos/0.69-4-IGB-gcc-4.9.4-Perl-5.24.1 Circos/0.69-9-IGB-gcc-8.2.0-Perl-5.28.1 Clustal-Omega/1.2.4-IGB-gcc-4.9.4 Clustal-Omega/1.2.4-IGB-gcc-8.2.0 ClustalW2/2.1-IGB-gcc-4.9.4 Crossmap/0.6.5-IGB-gcc-8.2.0-Python-3.7.2 Cufflinks/2.2.1 Cufflinks/2.2.1-IGB-gcc-4.9.4-b4fa050 DANPOS/2.2.2-IGB-gcc-4.9.4-Python-2.7.13-R-3.3.3 DAS_Tool/1.1.2-IGB-gcc-4.9.4 DB/18.1.32-IGB-gcc-4.9.4 DIAMOND/0.8.38-IGB-gcc-4.9.4 DIAMOND/0.9.10-IGB-gcc-4.9.4 DIAMOND/0.9.16-IGB-gcc-4.9.4 DIAMOND/0.9.22-IGB-gcc-4.9.4 DIAMOND/0.9.24-IGB-gcc-4.9.4 DIAMOND/0.9.24-IGB-gcc-8.2.0 DIAMOND/0.9.36-IGB-gcc-8.2.0 DIAMOND/0.9.9-IGB-gcc-4.9.4 DIAMOND/2.0.15-IGB-gcc-8.2.0 DIAMOND/2.0.6-IGB-gcc-8.2.0 DIAMOND/2.0.9-IGB-gcc-8.2.0 DISCOVARdenovo/52488-IGB-gcc-4.9.4 DIYABC/2.1.0 DamMet/1.0.2-IGB-gcc-8.2.0 DeepEC/20190806-IGB-gcc-4.9.4-Python-3.6.1 DendroPy/4.4.0-IGB-gcc-4.9.4-Python-3.6.1 DendroPy/4.4.0-IGB-gcc-8.2.0-Python-3.7.2 Doxygen/1.8.13-IGB-gcc-4.9.4 EAT/1.0.0-IGB-gcc-8.2.0-Python-3.7.2 EDirect/20160310-IGB-gcc-4.9.4 EMBOSS/6.6.0-IGB-gcc-4.9.4-Java-1.8.0_121 EMIRGE/0.61.1-IGB-gcc-4.9.4-Python-2.7.13 EVidenceModeler/1.1.1-IGB-gcc-4.9.4-Perl-5.26.1-unthreaded EVidenceModeler/1.1.1-IGB-gcc-8.2.0-Perl-5.28.1 EasyBuild/4.9.2 ExonOntology/20171018-IGB-gcc-8.2.0-Perl-5.28.1 FALCON/1.8.8-IGB-gcc-4.9.4-Python-2.7.13 FALCON_unzip/0.4.0-IGB-gcc-4.9.4-Python-2.7.13 FASTX-Toolkit/0.0.14-IGB-gcc-4.9.4 FEELnc/20180117-IGB-gcc-4.9.4 FFmpeg/3.3-IGB-gcc-4.9.4 FFmpeg/4.4-IGB-gcc-8.2.0 FLAC/1.3.1-IGB-gcc-4.9.4 FLASH2/2.2.00-IGB-gcc-4.9.4 Falcon2Fastg/0.3.1-IGB-gcc-4.9.4-Python-2.7.13 FastANI/1.32 FastME/2.1.6.1-IGB-gcc-4.9.4 FastME/2.1.6.3-IGB-gcc-8.2.0 FastQ-Screen/0.14.1-IGB-gcc-8.2.0 FastQC/0.11.5-Java-1.8.0_201 FastQC/0.11.8-Java-1.8.0_152 FastQC/0.11.9-Java-1.8.0_201 FastTree/2.1.10-IGB-gcc-4.9.4 FastTree/2.1.11-IGB-gcc-8.2.0 Filtlong/0.2.1-IGB-gcc-8.2.0 Flye/2.4.2-IGB-gcc-4.9.4-Python-2.7.13 Flye/2.7-IGB-gcc-4.9.4-Python-3.6.1 Flye/2.7.1-IGB-gcc-8.2.0-Python-3.7.2 Flye/2.8.1-IGB-gcc-8.2.0-Python-3.7.2 Flye/2.8.2-IGB-gcc-8.2.0-Python-3.7.2 Flye/2.9-IGB-gcc-8.2.0-Python-3.7.2 Flye/2.9.2-IGB-gcc-8.2.0-Python-3.7.2 FragGeneScan/1.31-IGB-gcc-4.9.4 FreeBayes/1.1.0-IGB-gcc-4.9.4 FreeBayes/1.3.4-IGB-gcc-8.2.0 FreeImage/3.18.0-IGB-gcc-4.9.4 GAMS/23.6.5 GAMS/32.2.0 GAPPadder/20170601-IGB-gcc-4.9.4 GATK/3.7-Java-1.8.0_121 GATK/3.8-0-Java-1.8.0_121 GATK/3.8-0-Java-1.8.0_152 GATK/3.8-1-0-Java-1.8.0_152 GATK/4.0.4.0-IGB-gcc-4.9.4-Java-1.8.0_152-Python-3.6.1 GATK/4.0.9.0-IGB-gcc-4.9.4-Java-1.8.0_152-Python-3.6.1 GATK/4.1.4.0-Java-1.8.0_152 GATK/4.2.4.1-Java-1.8.0_201 GATK/4.2.6.1-Java-1.8.0_201 GATK/4.4.0.0-Java-17.0.6 GBS-SNP-CROP/4.0-IGB-gcc-4.9.4 GBSX/1.3-IGB-gcc-8.2.0-Java-1.8.0_201 GD/2.66-IGB-gcc-4.9.4-Perl-5.24.1 GD/2.73-IGB-gcc-8.2.0-Perl-5.28.1 GDAL/2.3.1-IGB-gcc-4.9.4 GDAL/3.0.3-IGB-gcc-8.2.0 GDAL/3.9.0-IGB-gcc-8.2.0 GFOLD/1.1.4-IGB-gcc-4.9.4 GLIMMER/3.02b-IGB-gcc-4.9.4 GMAP-GSNAP/2017-11-15-IGB-gcc-4.9.4 GMAP/2018-05-30-IGB-gcc-4.9.4 GMAP/2020-06-04-IGB-gcc-8.2.0 GMTK/1.4.4-IGB-gcc-4.9.4 GROMACS/2021.2-IGB-gcc-8.2.0 GROMACS/2021.2-IGB-gcc-8.2.0-CUDA-11.1.0 GTDBTk/1.5.0 GTDBTk/2.1.1 GTDBTk/2.3.0 GTK+/2.24.31-IGB-gcc-4.9.4-Python-2.7.13 GTK+/2.24.31-IGB-gcc-4.9.4-Python-3.6.1 GTK+/2.24.31-IGB-gcc-8.2.0-Python-3.7.2 GUIDANCE/2.02-IGB-gcc-4.9.4-Perl-5.24.1 GUSHR/20200928-Java-1.8.0_201 Gaussian/16.C.01 GeneMark-ES/4.33-IGB-gcc-4.9.4-Perl-5.24.1 GeneMark-ES/4.33-IGB-gcc-4.9.4-Perl-5.26.1-unthreaded GeneMark-ES/4.62-IGB-gcc-8.2.0-Perl-5.28.1 GeneMarkS-T/5.1 GeneMarkS/4.30-IGB-gcc-4.9.4 GenomeThreader/1.7.1 GenomicConsensus/2.3.3 GhostScript/9.21-IGB-gcc-4.9.4 GhostScript/9.55.0-IGB-gcc-8.2.0 GlimmerHMM/3.0.4-IGB-gcc-4.9.4 Gradle/4.7 GraphicsMagick/1.3.26-IGB-gcc-4.9.4 Grinder/0.5.4-IGB-gcc-4.9.4-Perl-5.24.1 Gurobi/7.5.2 HAPO-G/1.2-IGB-gcc-8.2.0 HDF5/1.8.12-IGB-gcc-4.9.4 HDF5/1.8.18-IGB-gcc-4.9.4 HDF5/1.8.18-IGB-gcc-8.2.0 HISAT2-3N/20221013-IGB-gcc-8.2.0-Python-3.7.2 HISAT2/2.0.5-IGB-gcc-4.9.4 HISAT2/2.1.0-IGB-gcc-4.9.4 HISAT2/2.2.0-IGB-gcc-4.9.4 HISAT2/2.2.1-IGB-gcc-8.2.0-Python-3.7.2 HMMER/2.3.2-IGB-gcc-4.9.4 HMMER/2.3.2-IGB-gcc-8.2.0 HMMER/3.1b2-IGB-gcc-4.9.4 HMMER/3.2.1-IGB-gcc-4.9.4 HMMER/3.3.1-IGB-gcc-8.2.0 HOMER/4.9.1-IGB-gcc-4.9.4-Perl-5.24.1 HOPS/0.33 HTSeq/0.12.4-IGB-gcc-8.2.0-Python-3.7.2 HTSeq/0.9.0-IGB-gcc-4.9.4-Python-2.7.13 HTSeq/0.9.1-IGB-gcc-4.9.4-Python-2.7.13 HTSlib/1.10.2-IGB-gcc-8.2.0 HTSlib/1.11-IGB-gcc-8.2.0 HTSlib/1.12-IGB-gcc-8.2.0 HTSlib/1.17-IGB-gcc-8.2.0 HTSlib/1.4-IGB-gcc-4.9.4 HTSlib/1.5-IGB-gcc-4.9.4 HTSlib/1.9-IGB-gcc-4.9.4 HTSlib/1.9-IGB-gcc-8.2.0 HUMAnN2/0.11.1-IGB-gcc-4.9.4-Python-3.6.1 HUMAnN2/0.11.2-IGB-gcc-4.9.4-Python-3.6.1 HapFM/20240614-IGB-gcc-8.2.0-Python-3.7.2 HiC-Pro/3.1.0-IGB-gcc-8.2.0-Python-3.7.2 HiCExplorer/2.2.1.1-IGB-gcc-8.2.0-Python-3.7.2 HiCExplorer/3.7.2-IGB-gcc-8.2.0-Python-3.7.2 HiPhase/1.4.3 IDR/2.0.4-IGB-gcc-4.9.4-Python-3.6.1 IM-TORNADO/2.0.3.3-IGB-gcc-4.9.4-Python-2.7.13 IPython/5.3.0-IGB-gcc-4.9.4-Python-3.6.1 IRFinder/1.3.1-IGB-gcc-8.2.0 ITSx/1.1.1-IGB-gcc-4.9.4 IllinoisDataBank/1.0-IGB-gcc-4.9.4-Python-3.6.1 ImageMagick/6.9.11-58-IGB-gcc-4.9.4 ImageMagick/7.0.5-5-IGB-gcc-4.9.4 Infernal/1.1.2-IGB-gcc-4.9.4 InterProScan/5.27-66.0-IGB-gcc-4.9.4-Java-1.8.0_152 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parabricks/3.1.0-IGB-gcc-8.2.0-Python-3.7.2 parabricks/3.7.0 parallel/20170622-IGB-gcc-4.9.4 parallel/20200822-IGB-gcc-8.2.0 pb-assembly/0.0.6 pb-assembly/0.0.8 pbaa/1.0.3.0 pbbam/1.0.7-IGB-gcc-8.2.0 pbccs/4.0 pbccs/6.4.0 pbipa/1.3.0 pbipa/1.3.2 pbmm2/1.12.0 pbmm2/1.4.0 pbsv/2.9.0 pbzip2/1.1.13-IGB-gcc-4.9.4 pbzip2/1.1.13-IGB-gcc-8.2.0 pcangsd/0.9-IGB-gcc-4.9.4-Python-2.7.13 pcangsd/20220330-IGB-gcc-8.2.0-Python-3.7.2 perfsuite/1.1.4-IGB-gcc-4.9.4 pfam/32.0 pfam/35.0 pfam/37.0 pfamscan/1.6-IGB-gcc-4.9.4-Perl-5.24.1 pfilt/1.5-IGB-gcc-8.2.0 pftoolsV3/3.2.12-IGB-gcc-8.2.0 pgap-db/2021-07-01.build5508 pgmpy/20180320-IGB-gcc-4.9.4-Python-3.6.1 phaser/20240408-IGB-gcc-8.2.0-Python-3.10.1 phobius/1.01 phrap/1.090518-IGB-gcc-8.2.0 phyloFlash/3.3-IGB-gcc-4.9.4 phylophlan/3.0.1-IGB-gcc-8.2.0-Python-3.7.2 phylophlan/3.0.3-IGB-gcc-8.2.0-Python-3.7.2 phylophlan2/0.34-IGB-gcc-4.9.4-Python-3.6.1 picard/1.77-Java-1.8.0_152 picard/2.10.1-Java-1.8.0_152 picard/2.27.5-Java-1.8.0_201 picard/2.9.0-Java-1.8.0_121 picard/2.9.4-Java-1.8.0_121 pigz/2.3.4-IGB-gcc-4.9.4 pigz/2.4-IGB-gcc-8.2.0 pilon/1.22-Java-1.8.0_121 pilon/1.23-Java-1.8.0_152 piranha/1.2.1-IGB-gcc-4.9.4 plass/2-c7e35-IGB-gcc-4.9.4 plass/3-764a3 plastid/0.5.1-IGB-gcc-8.2.0-Python-3.7.2 platanus/1.2.4 plink/1.07 plink/1.90 plotsr/1.1.1-IGB-gcc-8.2.0-Python-3.10.1 pod5/0.3.12-IGB-gcc-8.2.0-Python-3.10.1 pomoxis/0.1.0-IGB-gcc-4.9.4-Python-3.6.1 popins/1.0.1-IGB-gcc-8.2.0 popins2/20220127-IGB-gcc-8.2.0 popoolation2/1201-IGB-gcc-8.2.0-Perl-5.28.1 popscle/20210504-IGB-gcc-8.2.0 poretools/0.6.0-IGB-gcc-4.9.4-Python-2.7.13 ppanini/0.7.3.1-IGB-gcc-4.9.4-Python-2.7.13 pplacer/1.1.alpha19 pplacer/1.1.alpha19-IGB-gcc-8.2.0-Python-3.7.2 preseq/2.0.3-IGB-gcc-4.9.4 preseq/3.1.2-IGB-gcc-8.2.0 primer3/2.4.0-IGB-gcc-4.9.4 prinseq/0.20.4-IGB-gcc-4.9.4-Perl-5.24.1 prokka/1.13-IGB-gcc-4.9.4-Perl-5.24.1 prokka/1.14.6-IGB-gcc-4.9.4-Perl-5.24.1 prokka/1.14.6-IGB-gcc-8.2.0-Perl-5.28.1 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pylearn2/20170525-IGB-gcc-4.9.4-Python-2.7.13 pymol/2.3.4 pypy/7.3.5-IGB-gcc-4.9.4-Python-2.7.13 pytorch-geometric/2.0.4-IGB-gcc-8.2.0-Python-3.7.2 qgrs/1.0-IGB-gcc-4.9.4 qualimap/2.2.1-Java-1.8.0_121 quast/4.6.1-IGB-gcc-4.9.4-Python-2.7.13 quast/5.0.0-IGB-gcc-4.9.4-Python-3.6.1 quast/5.0.2-IGB-gcc-8.2.0-Python-3.7.2 quickmerge/0.2-IGB-gcc-4.9.4-Python-2.7.13 rMATS-turbo/4.1.1-IGB-gcc-8.2.0-Python-3.7.2 rMATS/3.2.5-IGB-gcc-4.9.4-Python-2.7.13 racon/0.5.0-IGB-gcc-4.9.4-Python-2.7.13 racon/0.5.0-IGB-gcc-4.9.4-Python-3.6.1 racon/1.4.13-IGB-gcc-8.2.0 radar/1.3-IGB-gcc-8.2.0 radinitio/1.1.0-IGB-gcc-4.9.4-Python-3.6.1 radinitio/1.1.1-IGB-gcc-4.9.4-Python-3.6.1 randfold/2.0.1-IGB-gcc-4.9.4 raxml-ng/1.2.0 rclone/1.41 rclone/1.52.3 rclone/1.60.0 rdkit/2020_03_3-IGB-gcc-4.9.4-Python-3.6.1 rdkit/2021_03_1-IGB-gcc-8.2.0-Python-3.7.2 redbiom/0.3.2-IGB-gcc-4.9.4-Python-3.6.1 refseq-db/211 reveal/0.2.2-IGB-gcc-4.9.4-Python-2.7.13 rgeos/0.4-2-IGB-gcc-4.9.4-R-3.5.0 rnaquast/2.1.0-IGB-gcc-8.2.0-Python-3.7.2 rnaseqtools/1.0.2-IGB-gcc-4.9.4 roary/3.13.0-IGB-gcc-4.9.4-Perl-5.24.1 rodeo2/2.4.2-IGB-gcc-8.2.0-Python-3.7.2 root-painter-trainer/0.2.19.1-IGB-gcc-8.2.0-Python-3.10.1 root/6.14.06-IGB-gcc-4.9.4 root/6.14.06-IGB-gcc-4.9.4-Python-2.7.13 rosetta/2017.52-IGB-gcc-4.9.4 rosetta/3.12-IGB-gcc-4.9.4 rosetta/3.13-IGB-gcc-8.2.0 rpy/1.0.3-IGB-gcc-4.9.4-Python-2.7.13-R-2.15.3 rpy2/2.8.6-IGB-gcc-4.9.4-Python-2.7.13-R-3.3.3 rpy2/2.8.6-IGB-gcc-4.9.4-Python-2.7.13-R-3.5.0 rpy2/2.9.0-IGB-gcc-4.9.4-Python-3.6.1-R-3.3.3 rpy2/2.9.5-IGB-gcc-8.2.0-Python-3.7.2-R-4.1.2 rpy2/3.0.1-IGB-gcc-4.9.4-Python-3.6.1-R-3.5.0 rpy2/3.2.4-IGB-gcc-8.2.0-Python-3.7.2-R-3.6.0 rpy2/3.4.5-IGB-gcc-8.2.0-Python-3.7.2-R-4.1.2 rtg-tools/3.8.4 sabre/20171114-IGB-gcc-4.9.4 salt/beta0.2-IGB-gcc-8.2.0 sambamba/0.6.6 sambamba/0.8.0 samblaster/0.1.24-IGB-gcc-4.9.4 sbanalyzer/3.0-14 sbanalyzer/3.1-2 scallop/0.10.3-IGB-gcc-4.9.4 scallop/0.10.4-IGB-gcc-4.9.4 scanpy/1.10.1-IGB-gcc-8.2.0-Python-3.10.1 scenicplus/20240513 scikit-allel/1.3.8 scikit-bio/0.6.0 scikit-cuda/0.5.1-IGB-gcc-4.9.4-Python-2.7.13 scoary/1.6.16-IGB-gcc-4.9.4-Python-3.6.1 scrappie/1.3.0-IGB-gcc-4.9.4 segemehl/0.3.4-IGB-gcc-8.2.0 sentieon-cli/1.0.0-IGB-gcc-8.2.0-Python-3.10.1 sentieon/201808 sentieon/201911 sentieon/202010.01 sentieon/202112 sentieon/202112.01 sentieon/202112.04 sentieon/202112.06 sentieon/202308 sentieon/202308.02 seqan/2.2.0-IGB-gcc-8.2.0 seqan/2.3.2-IGB-gcc-4.9.4 seqkit/0.12.1 seqkit/0.15.0 seqkit/2.0.0 seqkit/2.3.0 seqkit/2.5.1 seqkit/2.6.1 seqtk/1.2-IGB-gcc-4.9.4 seqtk/1.2-IGB-gcc-8.2.0 seqtk/1.3-IGB-gcc-8.2.0 seqtk/1.4-IGB-gcc-8.2.0 shapeit/2.20 sharutils/4.15.2-IGB-gcc-4.9.4 shasta/0.2.0 shortbred/0.9.5-IGB-gcc-4.9.4-Python-2.7.13 sickle/1.33-IGB-gcc-8.2.0 silva/138.1 simba/1.3.0 singularity/3.4.1 singularity/3.8.1 skylign/1.1-IGB-gcc-4.9.4-Perl-5.24.1 sleap/1.2.4-IGB-gcc-8.2.0-Python-3.7.2 smrtlink/10.0.0.108728 smrtlink/11.0.0.146107 smrtlink/11.1.0.166339 smrtlink/13.0.0.207600 smrtlink/8.0.0.80529 smrtlink/9.0.0.92188 smudgeplot/0.2.5-IGB-gcc-8.2.0-Python-3.7.2 snakemake/6.0.5-IGB-gcc-8.2.0-Python-3.7.2 snapgene-reader/0.1.19-IGB-gcc-8.2.0-Python-3.7.2 snoscan/0.9.1-IGB-gcc-4.9.4-Perl-5.24.1 snoscan/0.9.1-IGB-gcc-4.9.4-Perl-5.26.1-unthreaded snpEff/4.3o-Java-1.8.0_121 snpEff/4.3t-Java-1.8.0_152 snpEff/5.0e-Java-15.0.1 snpEff/5.1f-Java-15.0.1 snpomatic/1.0-IGB-gcc-4.9.4 songbird/1.0.3-IGB-gcc-4.9.4-Python-3.6.1 sortmerna/2.1 sortmerna/4.3.6 sourcetracker/2.0.1-IGB-gcc-4.9.4-Python-3.6.1 sourmash/4.6.1-IGB-gcc-8.2.0-Python-3.10.1 spaCy/2.3.2-IGB-gcc-4.9.4-Python-3.6.1 spaceranger/1.0.0 spaceranger/1.1.0 spaceranger/1.2.2 spaceranger/1.3.0 spaceranger/2.0.0 spaceranger/2.1.0 spaceranger/3.0.1 spaceranger/3.1.1 sparsehash/2.0.3-IGB-gcc-4.9.4 sparsehash/2.0.3-IGB-gcc-8.2.0 spladder/3.1.0-IGB-gcc-8.2.0-Python-3.10.1 squid/1.9g-IGB-gcc-4.9.4 ssaha2/2.5.5-IGB-gcc-4.9.4 ssaha_pileup/0.6-IGB-gcc-4.9.4 strauto/1-IGB-gcc-4.9.4 strelka/2.9.9 stringtie/2.1.1-IGB-gcc-4.9.4 structure/2.3.4-IGB-gcc-4.9.4 svtools/0.5.1-IGB-gcc-4.9.4-Python-2.7.13 svtyper/0.7.1-IGB-gcc-4.9.4-Python-2.7.13 swift-t/1.3-IGB-gcc-4.9.4 synapseclient/1.9.2-IGB-gcc-4.9.4-Python-3.6.1 t3f/1.1.0-IGB-gcc-4.9.4-Python-3.6.1 t3f/1.1.0-IGB-gcc-4.9.4-Python-3.6.1-TF-2.0.3 t3f/20200316-IGB-gcc-4.9.4-Python-3.6.1-TF-2.0.3 t3f/20200316-IGB-gcc-4.9.4-Python-3.6.1-TF-2.2.0 tRNAscan-SE/1.3.1-IGB-gcc-4.9.4-Perl-5.26.1-unthreaded tabix/0.2.6-IGB-gcc-4.9.4 tabixpp/1.1.0-IGB-gcc-8.2.0 tagdigger/1.1-IGB-gcc-4.9.4-Python-3.6.1 tailseeker-db/20161215 tailseeker/3.2.1 tar/1.32-IGB-gcc-8.2.0 tbl2asn/20180516 tbl2asn/20190117 tbl2asn/20200203 tbl2asn/20200707 tensorboardX/1.9-IGB-gcc-4.9.4-Python-3.6.1 tensorboardX/2.0-IGB-gcc-4.9.4-Python-3.6.1 tensorboardX/2.1-IGB-gcc-8.2.0-Python-3.7.2 tensorboardX/2.5.1-IGB-gcc-8.2.0 tensorly/0.4.2-IGB-gcc-4.9.4-Python-3.6.1 toil/5.3.0-IGB-gcc-8.2.0-Python-3.7.2 tolkein/0.2.6-IGB-gcc-4.9.4-Python-3.6.1 tombo/1.5-IGB-gcc-4.9.4-Python-3.6.1 torchsample/0.1.3-IGB-gcc-4.9.4-Python-3.6.1 transformers/4.40.2-IGB-gcc-8.2.0-Python-3.10.1 transrate/1.0.3 tre/20161208-IGB-gcc-4.9.4 treemix/1.13-IGB-gcc-4.9.4 trf/4.0.9 trimal/1.5.0-IGB-gcc-8.2.0 truesight/0.06-IGB-gcc-4.9.4 ukbiobank/20190130 umap-learn/0.4.6-IGB-gcc-4.9.4-Python-3.6.1 umap-learn/0.4.6-IGB-gcc-8.2.0-Python-3.7.2 umap-learn/0.5.2-IGB-gcc-8.2.0-Python-3.7.2 umap-learn/0.5.6-IGB-gcc-8.2.0-Python-3.10.1 umi-tools/1.0.1-IGB-gcc-8.2.0-Python-3.7.2 unanimity/20180307-IGB-gcc-4.9.4 uniprot/2022_05 uniprot/2023_04 uniprot/2024_04 uniprot/2024_05 uniprot/2024_06 unirep/20200303-IGB-gcc-4.9.4-Python-3.6.1 unrar/5.7.3-IGB-gcc-4.9.4 util-linux/2.34-IGB-gcc-4.9.4 valgrind/3.13.0-IGB-gcc-4.9.4 variscan/2.0.3-IGB-gcc-4.9.4 vartrix/1.1.22 vcfCodingSnps/1.5 vcflib/1.0.0-rc2-IGB-gcc-8.2.0 vcflib/1.0.2-IGB-gcc-8.2.0 velocyto.R/20190527-IGB-gcc-4.9.4-R-3.4.2 velocyto/0.17.17-IGB-gcc-4.9.4-Python-3.6.1 velvet/1.2.10-IGB-gcc-4.9.4-kmer_121 velvet/1.2.10-IGB-gcc-8.2.0-kmer_121 vg/1.15.0 virulencefinder/2.0.4-IGB-gcc-8.2.0-Python-3.7.2 weblogo/3.7.12-IGB-gcc-8.2.0-Python-3.10.1 whatshap/1.0-IGB-gcc-8.2.0-Python-3.7.2 wombat/20210107 wtdbg2/2.3-IGB-gcc-4.9.4 wtdbg2/2.5-IGB-gcc-4.9.4 wxPython/4.1.0-IGB-gcc-4.9.4-Python-3.6.1 wxPython/4.1.0-IGB-gcc-8.2.0-Python-3.7.2 xTea/0.1.6 xgboost/0.80-IGB-gcc-4.9.4-Python-3.6.1 xpore/2.1-IGB-gcc-8.2.0-Python-3.10.1 yahs/1.2a.2-IGB-gcc-8.2.0 zorro/20111201 zstd/1.4.4-IGB-gcc-4.9.4 zstd/1.5.5-IGB-gcc-8.2.0

 

Commands to run

Recommended Settings

Email

 

Job Name

 

Working directory

SLURM Script

Optional Settings

Std out file

 

Std err file

 

Project